The Illumina paired-end sequencing system is capable of identifying massive numbers of microsatellite loci, while expending little time, reducing costs, and providing a large amount of data. We examined ascertainment bias in twelve bats of the genus, obtaining null/monomorphic/polymorphic amplifications. Levels of expected heterozygosity across all markers were high to medium (mean H E = 0.79, mean H O = 0.72). We observed medium-high genetic variation across most loci, but only 12 were functionally polymorphic. All markers were genotyped on 26 different individuals from distinct locations of the distributional area of S. We selected and tested 14 polymorphic (di, tri, and tetra) microsatellites.
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We analyzed millions of resulting reads with specialized software to extract those reads that contained di-, tri-, tetra-, penta-, and hexanucleotide microsatellites. We used a technique based on Illumina paired-end sequencing of a library highly enriched for microsatellite repeats to develop loci for S.
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Sturnira parvidens is a widespread frugivorous bat of the deciduous forests of the Neotropics, is highly abundant, and is a major component in fruit dispersal to regenerate ecosystems. This genus forms a well-supported monophyletic clade with at least twenty-one recognized species, as well as several others under taxonomic review. Sturnira is one of the most species-rich genera in the Neotropics, and it is found from Mexico and the Lesser Antilles to Argentina. Isolation and characterization of microsatellite markers for Sturnira parvidens and cross-species amplification in Sturnira species. Cite this article Gutiérrez EG, Hernández Canchola G, León Paniagua LS, Martínez Méndez N, Ortega J. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
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Licence This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. 2 Department of Biología Evolutiva, Facultad de Ciencias, UNAM, CDMX, CDMX, México DOI 10.7717/peerj.3367 Published Accepted Received Academic Editor Erica Goss Subject Areas Ecology, Genetics, Molecular Biology, Zoology Keywords Microsatellites, Sturnira parvidens, Pal_finder, Illumina Copyright © 2017 Gutiérrez et al.